Detailed information of SNP:
|
SNP ID:
sf1217953502(Gbrowse)
Chromosome: chr12 Position: 17953502 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.20% | 40.80% |
| All Indica | 799 | 39.17% | 60.83% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 53.60% | 46.40% |
| Indica II | 213 | 10.80% | 89.20% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217953502 | A->C | LOC_Os12g30040(LOC_Os12g30040.1) | INTRON |