Detailed information of SNP:
|
SNP ID:
sf1217961638(Gbrowse)
Chromosome: chr12 Position: 17961638 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 88.69% | 11.31% |
| All Indica | 795 | 91.70% | 8.30% |
| All Japonica | 497 | 87.73% | 12.27% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 209 | 79.43% | 20.57% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 86.87% | 13.13% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217961638 | C->T | INTERGENIC | None |