Detailed information of SNP:
|
SNP ID:
sf1217964634(Gbrowse)
Chromosome: chr12 Position: 17964634 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 83.91% | 16.09% |
| All Indica | 748 | 71.12% | 28.88% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 331 | 55.89% | 44.11% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 204 | 75.00% | 25.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217964634 | C->T | INTERGENIC | None |