Detailed information of SNP:
|
SNP ID:
sf1217984210(Gbrowse)
Chromosome: chr12 Position: 17984210 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 93.97% | 6.03% |
| All Indica | 760 | 91.05% | 8.95% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 351 | 84.33% | 15.67% |
| Indica II | 208 | 96.63% | 3.37% |
| Indica Intermediate | 201 | 97.01% | 2.99% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217984210 | A->G | INTERGENIC | None |