Detailed information of SNP:
|
SNP ID:
sf1217993919(Gbrowse)
Chromosome: chr12 Position: 17993919 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 67.18% | 32.82% |
| All Indica | 798 | 75.31% | 24.69% |
| All Japonica | 497 | 51.31% | 48.69% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 60.60% | 39.40% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217993919 | A->G | INTERGENIC | None |