Detailed information of SNP:
|
SNP ID:
sf1217993969(Gbrowse)
Chromosome: chr12 Position: 17993969 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 64.03% | 35.97% |
| All Indica | 798 | 69.67% | 30.33% |
| All Japonica | 497 | 51.71% | 48.29% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 212 | 41.51% | 58.49% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 60.90% | 39.10% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217993969 | C->A | INTERGENIC | None |