Detailed information of SNP:
|
SNP ID:
sf1217995832(Gbrowse)
Chromosome: chr12 Position: 17995832 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 89.55% | 10.45% |
| All Indica | 796 | 89.07% | 10.93% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 80.48% | 19.52% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217995832 | C->T | INTERGENIC | None |