Detailed information of SNP:
|
SNP ID:
sf1217996408(Gbrowse)
Chromosome: chr12 Position: 17996408 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 95.63% | 4.37% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217996408 | T->C | INTERGENIC | None |