Detailed information of SNP:
|
SNP ID:
sf1218014978(Gbrowse)
Chromosome: chr12 Position: 18014978 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 68.57% | 31.43% |
| All Indica | 769 | 52.67% | 47.33% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 62 | 33.87% | 66.13% |
| Indica I | 353 | 56.66% | 43.34% |
| Indica II | 211 | 45.50% | 54.50% |
| Indica Intermediate | 205 | 53.17% | 46.83% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218014978 | C->T | LOC_Os12g30120(LOC_Os12g30120.1) | INTRON |