Detailed information of SNP:
|
SNP ID:
sf1218021878(Gbrowse)
Chromosome: chr12 Position: 18021878 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 56.72% | 43.28% |
| All Indica | 798 | 39.85% | 60.15% |
| All Japonica | 493 | 91.28% | 8.72% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 48.27% | 51.73% |
| Indica II | 212 | 18.40% | 81.60% |
| Indica Intermediate | 211 | 46.45% | 53.55% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218021878 | A->G | INTERGENIC | None |