Detailed information of SNP:
|
SNP ID:
sf1218022634(Gbrowse)
Chromosome: chr12 Position: 18022634 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 94.71% | 5.29% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218022634 | G->A | INTERGENIC | None |