Detailed information of SNP:
|
SNP ID:
sf1218026207(Gbrowse)
Chromosome: chr12 Position: 18026207 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 80.00% | 20.00% |
| All Indica | 797 | 96.61% | 3.39% |
| All Japonica | 496 | 52.82% | 47.18% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 334 | 61.08% | 38.92% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218026207 | G->A | INTERGENIC | None |