Detailed information of SNP:
|
SNP ID:
sf1218026347(Gbrowse)
Chromosome: chr12 Position: 18026347 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 73.50% | 26.50% |
| All Indica | 799 | 86.98% | 13.02% |
| All Japonica | 497 | 52.72% | 47.28% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 60.60% | 39.40% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218026347 | G->A | INTERGENIC | None |