Detailed information of SNP:
SNP ID:
sf1218026575(Gbrowse)
Chromosome: chr12 Position: 18026575 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1416 | 96.40% | 3.60% |
All Indica | 797 | 96.61% | 3.39% |
All Japonica | 496 | 95.56% | 4.44% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 211 | 91.47% | 8.53% |
Indica Intermediate | 211 | 96.21% | 3.79% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 93 | 79.57% | 20.43% |
Japonica Intermediate | 68 | 95.59% | 4.41% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1218026575 | A->T | INTERGENIC | None |