Detailed information of SNP:
|
SNP ID:
sf1218031746(Gbrowse)
Chromosome: chr12 Position: 18031746 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 64.89% | 35.11% |
| All Indica | 785 | 77.83% | 22.17% |
| All Japonica | 497 | 48.89% | 51.11% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 83.69% | 16.31% |
| Indica II | 205 | 70.73% | 29.27% |
| Indica Intermediate | 206 | 74.27% | 25.73% |
| Temperate Japonica | 335 | 59.10% | 40.90% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218031746 | A->C | INTERGENIC | None |