Detailed information of SNP:
|
SNP ID:
sf1218033538(Gbrowse)
Chromosome: chr12 Position: 18033538 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 80.27% | 19.73% |
| All Indica | 797 | 96.74% | 3.26% |
| All Japonica | 496 | 53.02% | 46.98% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 335 | 60.90% | 39.10% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218033538 | C->T | INTERGENIC | None |