Detailed information of SNP:
|
SNP ID:
sf1218035179(Gbrowse)
Chromosome: chr12 Position: 18035179 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 92.10% | 7.90% |
| All Indica | 798 | 89.47% | 10.53% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218035179 | C->T | INTERGENIC | None |