Detailed information of SNP:
|
SNP ID:
sf1218036144(Gbrowse)
Chromosome: chr12 Position: 18036144 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 84.92% | 15.08% |
| All Indica | 761 | 75.69% | 24.31% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 374 | 89.84% | 10.16% |
| Indica II | 178 | 46.63% | 53.37% |
| Indica Intermediate | 209 | 75.12% | 24.88% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218036144 | A->G | INTERGENIC | None |