Detailed information of SNP:
|
SNP ID:
sf1218036145(Gbrowse)
Chromosome: chr12 Position: 18036145 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 84.09% | 15.91% |
| All Indica | 763 | 74.84% | 25.16% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 180 | 45.56% | 54.44% |
| Indica Intermediate | 208 | 74.04% | 25.96% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218036145 | T->C | INTERGENIC | None |