Detailed information of SNP:
|
SNP ID:
sf1218036572(Gbrowse)
Chromosome: chr12 Position: 18036572 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 80.91% | 19.09% |
| All Indica | 796 | 97.36% | 2.64% |
| All Japonica | 496 | 55.04% | 44.96% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 334 | 61.98% | 38.02% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218036572 | A->C | INTERGENIC | None |