Detailed information of SNP:
|
SNP ID:
sf1218036692(Gbrowse)
Chromosome: chr12 Position: 18036692 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1308 | 66.74% | 33.26% |
| All Indica | 705 | 77.16% | 22.84% |
| All Japonica | 489 | 51.53% | 48.47% |
| Aus | 62 | 83.87% | 16.13% |
| Indica I | 370 | 89.19% | 10.81% |
| Indica II | 150 | 54.00% | 46.00% |
| Indica Intermediate | 185 | 71.89% | 28.11% |
| Temperate Japonica | 334 | 60.48% | 39.52% |
| Tropical Japonica | 93 | 26.88% | 73.12% |
| Japonica Intermediate | 62 | 40.32% | 59.68% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218036692 | T->C | INTERGENIC | None |