Detailed information of SNP:



SNP ID: sf1218036692(Gbrowse)

Chromosome: chr12

Position: 18036692
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1308 66.74% 33.26%
All Indica705 77.16% 22.84%
All Japonica489 51.53% 48.47%
Aus62 83.87% 16.13%
Indica I370 89.19% 10.81%
Indica II150 54.00% 46.00%
Indica Intermediate185 71.89% 28.11%
Temperate Japonica334 60.48% 39.52%
Tropical Japonica93 26.88% 73.12%
Japonica Intermediate62 40.32% 59.68%
Group VI/Aromatic14 35.71% 64.29%
Intermediate38 52.63% 47.37%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1218036692 T->C INTERGENIC None