Detailed information of SNP:
|
SNP ID:
sf1218036724(Gbrowse)
Chromosome: chr12 Position: 18036724 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 93.28% | 6.72% |
| All Indica | 795 | 90.06% | 9.94% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 91.69% | 8.31% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218036724 | C->T | INTERGENIC | None |