Detailed information of SNP:
|
SNP ID:
sf1218038952(Gbrowse)
Chromosome: chr12 Position: 18038952 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 77.56% | 22.44% |
| All Indica | 797 | 91.97% | 8.03% |
| All Japonica | 497 | 50.70% | 49.30% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 39.70% | 60.30% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218038952 | T->A | INTERGENIC | None |