Detailed information of SNP:
|
SNP ID:
sf1218039163(Gbrowse)
Chromosome: chr12 Position: 18039163 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 50.53% | 49.47% |
| All Indica | 797 | 56.96% | 43.04% |
| All Japonica | 497 | 45.67% | 54.33% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 374 | 80.21% | 19.79% |
| Indica II | 213 | 17.84% | 82.16% |
| Indica Intermediate | 210 | 55.24% | 44.76% |
| Temperate Japonica | 335 | 59.10% | 40.90% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218039163 | G->A | INTERGENIC | None |