Detailed information of SNP:
|
SNP ID:
sf1218039667(Gbrowse)
Chromosome: chr12 Position: 18039667 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 71.63% | 28.37% |
| All Indica | 790 | 50.51% | 49.49% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 26.70% | 73.30% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 210 | 52.86% | 47.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218039667 | T->C | INTERGENIC | None |