Detailed information of SNP:
|
SNP ID:
sf1218039938(Gbrowse)
Chromosome: chr12 Position: 18039938 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 65.37% | 34.63% |
| All Indica | 791 | 78.00% | 22.00% |
| All Japonica | 497 | 51.31% | 48.69% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 374 | 89.84% | 10.16% |
| Indica II | 208 | 60.10% | 39.90% |
| Indica Intermediate | 209 | 74.64% | 25.36% |
| Temperate Japonica | 335 | 61.49% | 38.51% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218039938 | A->G | INTERGENIC | None |