Detailed information of SNP:
|
SNP ID:
sf1218040122(Gbrowse)
Chromosome: chr12 Position: 18040122 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 62.20% | 37.80% |
| All Indica | 799 | 73.84% | 26.16% |
| All Japonica | 496 | 50.40% | 49.60% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 334 | 59.58% | 40.42% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218040122 | C->G | LOC_Os12g30130(LOC_Os12g30130.1) | INTRON |