Detailed information of SNP:
|
SNP ID:
sf1218043212(Gbrowse)
Chromosome: chr12 Position: 18043212 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 76.29% | 23.71% |
| All Indica | 756 | 57.67% | 42.33% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 37.18% | 62.82% |
| Indica II | 207 | 91.30% | 8.70% |
| Indica Intermediate | 194 | 59.28% | 40.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218043212 | A->T | INTERGENIC | None |