Detailed information of SNP:
|
SNP ID:
sf1218043484(Gbrowse)
Chromosome: chr12 Position: 18043484 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 79.87% | 20.13% |
| All Indica | 796 | 96.48% | 3.52% |
| All Japonica | 497 | 53.32% | 46.68% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 61.19% | 38.81% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218043484 | G->A | INTERGENIC | None |