Detailed information of SNP:
|
SNP ID:
sf1218045990(Gbrowse)
Chromosome: chr12 Position: 18045990 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 59.09% | 40.91% |
| All Indica | 794 | 39.55% | 60.45% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 61 | 40.98% | 59.02% |
| Indica I | 375 | 13.07% | 86.93% |
| Indica II | 211 | 80.57% | 19.43% |
| Indica Intermediate | 208 | 45.67% | 54.33% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218045990 | A->G | INTERGENIC | None |