Detailed information of SNP:
|
SNP ID:
sf1218046154(Gbrowse)
Chromosome: chr12 Position: 18046154 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 66.90% | 33.10% |
| All Indica | 797 | 75.53% | 24.47% |
| All Japonica | 497 | 52.31% | 47.69% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 56.81% | 43.19% |
| Indica Intermediate | 209 | 71.29% | 28.71% |
| Temperate Japonica | 335 | 60.60% | 39.40% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218046154 | C->G | INTERGENIC | None |