Detailed information of SNP:
|
SNP ID:
sf1218055899(Gbrowse)
Chromosome: chr12 Position: 18055899 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 54.80% | 45.20% |
| All Indica | 797 | 59.72% | 40.28% |
| All Japonica | 496 | 53.23% | 46.77% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 212 | 16.98% | 83.02% |
| Indica Intermediate | 210 | 61.90% | 38.10% |
| Temperate Japonica | 334 | 41.32% | 58.68% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218055899 | C->T | INTERGENIC | None |