Detailed information of SNP:
|
SNP ID:
sf1218056501(Gbrowse)
Chromosome: chr12 Position: 18056501 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.30% | 37.70% |
| All Indica | 799 | 69.21% | 30.79% |
| All Japonica | 497 | 50.10% | 49.90% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 23.47% | 76.53% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 60.00% | 40.00% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218056501 | G->T | INTERGENIC | None |