Detailed information of SNP:
|
SNP ID:
sf1218057719(Gbrowse)
Chromosome: chr12 Position: 18057719 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.76% | 42.24% |
| All Indica | 798 | 38.10% | 61.90% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 12.53% | 87.47% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 210 | 42.86% | 57.14% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218057719 | A->T | INTERGENIC | None |