Detailed information of SNP:
|
SNP ID:
sf1218058575(Gbrowse)
Chromosome: chr12 Position: 18058575 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 77.80% | 22.20% |
| All Indica | 799 | 93.37% | 6.63% |
| All Japonica | 497 | 52.52% | 47.48% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 60.30% | 39.70% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218058575 | C->G | INTERGENIC | None |