Detailed information of SNP:
|
SNP ID:
sf1218058606(Gbrowse)
Chromosome: chr12 Position: 18058606 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1347 | 76.47% | 23.53% |
| All Indica | 736 | 92.26% | 7.74% |
| All Japonica | 497 | 52.72% | 47.28% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 346 | 97.69% | 2.31% |
| Indica II | 203 | 87.19% | 12.81% |
| Indica Intermediate | 187 | 87.70% | 12.30% |
| Temperate Japonica | 335 | 60.60% | 39.40% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 33 | 69.70% | 30.30% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218058606 | G->A | INTERGENIC | None |