Detailed information of SNP:
|
SNP ID:
sf1218058664(Gbrowse)
Chromosome: chr12 Position: 18058664 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 51.48% | 48.52% |
| All Indica | 774 | 77.78% | 22.22% |
| All Japonica | 490 | 7.76% | 92.24% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 370 | 90.27% | 9.73% |
| Indica II | 202 | 58.91% | 41.09% |
| Indica Intermediate | 202 | 73.76% | 26.24% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 92 | 23.91% | 76.09% |
| Japonica Intermediate | 64 | 17.19% | 82.81% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 38 | 42.11% | 57.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218058664 | T->C | INTERGENIC | None |