Detailed information of SNP:
|
SNP ID:
sf1218059020(Gbrowse)
Chromosome: chr12 Position: 18059020 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 60.21% | 39.79% |
| All Indica | 797 | 38.02% | 61.98% |
| All Japonica | 491 | 92.46% | 7.54% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 12.53% | 87.47% |
| Indica II | 212 | 79.25% | 20.75% |
| Indica Intermediate | 210 | 41.90% | 58.10% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 64 | 82.81% | 17.19% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218059020 | A->G | INTERGENIC | None |