Detailed information of SNP:
|
SNP ID:
sf1218060053(Gbrowse)
Chromosome: chr12 Position: 18060053 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1351 | 68.84% | 31.16% |
| All Indica | 739 | 83.36% | 16.64% |
| All Japonica | 495 | 50.10% | 49.90% |
| Aus | 62 | 58.06% | 41.94% |
| Indica I | 370 | 91.62% | 8.38% |
| Indica II | 174 | 71.26% | 28.74% |
| Indica Intermediate | 195 | 78.46% | 21.54% |
| Temperate Japonica | 333 | 60.66% | 39.34% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218060053 | A->G | INTERGENIC | None |