Detailed information of SNP:
|
SNP ID:
sf1218061011(Gbrowse)
Chromosome: chr12 Position: 18061011 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 96.61% | 3.39% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218061011 | T->A | INTERGENIC | None |