Detailed information of SNP:
|
SNP ID:
sf1218062462(Gbrowse)
Chromosome: chr12 Position: 18062462 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 80.42% | 19.58% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 495 | 53.74% | 46.26% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 334 | 61.08% | 38.92% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218062462 | C->T | LOC_Os12g30140(LOC_Os12g30140.1) | Non-Synonymous SNP |