Detailed information of SNP:
|
SNP ID:
sf1218063557(Gbrowse)
Chromosome: chr12 Position: 18063557 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 86.92% | 13.08% |
| All Indica | 798 | 97.49% | 2.51% |
| All Japonica | 479 | 67.22% | 32.78% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 322 | 77.64% | 22.36% |
| Tropical Japonica | 91 | 39.56% | 60.44% |
| Japonica Intermediate | 66 | 54.55% | 45.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218063557 | C->T | INTERGENIC | None |