Detailed information of SNP:
|
SNP ID:
sf1218066942(Gbrowse)
Chromosome: chr12 Position: 18066942 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 57.52% | 42.48% |
| All Indica | 798 | 63.16% | 36.84% |
| All Japonica | 497 | 55.94% | 44.06% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 40.00% | 60.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218066942 | C->A | INTERGENIC | None |