Detailed information of SNP:
|
SNP ID:
sf1218068735(Gbrowse)
Chromosome: chr12 Position: 18068735 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 85.68% | 14.32% |
| All Indica | 795 | 82.26% | 17.74% |
| All Japonica | 488 | 99.59% | 0.41% |
| Aus | 65 | 26.15% | 73.85% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 55.19% | 44.81% |
| Indica Intermediate | 208 | 81.73% | 18.27% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218068735 | G->T | INTERGENIC | None |