Detailed information of SNP:
|
SNP ID:
sf1218068849(Gbrowse)
Chromosome: chr12 Position: 18068849 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 81.77% | 18.23% |
| All Indica | 793 | 98.74% | 1.26% |
| All Japonica | 481 | 52.60% | 47.40% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 208 | 98.08% | 1.92% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 321 | 34.58% | 65.42% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218068849 | A->G | INTERGENIC | None |