Detailed information of SNP:
|
SNP ID:
sf1218076335(Gbrowse)
Chromosome: chr12 Position: 18076335 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 68.50% | 31.50% |
| All Indica | 743 | 50.34% | 49.66% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 335 | 25.67% | 74.33% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 195 | 53.85% | 46.15% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218076335 | G->A | INTERGENIC | None |