Detailed information of SNP:
|
SNP ID:
sf1218076704(Gbrowse)
Chromosome: chr12 Position: 18076704 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 65.48% | 34.52% |
| All Indica | 793 | 45.52% | 54.48% |
| All Japonica | 490 | 94.29% | 5.71% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 370 | 21.08% | 78.92% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 210 | 48.57% | 51.43% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 76.09% | 23.91% |
| Japonica Intermediate | 64 | 92.19% | 7.81% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218076704 | A->T | INTERGENIC | None |