Detailed information of SNP:
|
SNP ID:
sf1218078862(Gbrowse)
Chromosome: chr12 Position: 18078862 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 93.52% | 6.48% |
| All Indica | 790 | 95.82% | 4.18% |
| All Japonica | 491 | 88.59% | 11.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 334 | 93.71% | 6.29% |
| Tropical Japonica | 92 | 70.65% | 29.35% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218078862 | C->T | INTERGENIC | None |