Detailed information of SNP:
|
SNP ID:
sf1218080023(Gbrowse)
Chromosome: chr12 Position: 18080023 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 68.09% | 31.91% |
| All Indica | 772 | 47.54% | 52.46% |
| All Japonica | 484 | 98.14% | 1.86% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 359 | 21.17% | 78.83% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 202 | 50.50% | 49.50% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 95.40% | 4.60% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218080023 | T->C | INTERGENIC | None |