Detailed information of SNP:
|
SNP ID:
sf1218081707(Gbrowse)
Chromosome: chr12 Position: 18081707 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 67.80% | 32.20% |
| All Indica | 798 | 80.33% | 19.67% |
| All Japonica | 497 | 48.49% | 51.51% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 54.93% | 45.07% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218081707 | T->G | INTERGENIC | None |